Molecular line observations of protoplanetary disks Edwige Chapillon Understanding the structure and evolution of disks surrounding young stars is one of the key issues to study the process of planet formation. Nevertheless the overall properties of those disks are not yet well constrained by observations. Several other molecules than CO and its isotopologues have been detected in the outer part of the disks in the millimeter domain and molecular tracers bring some constraints on the disk physical structure since different molecules sample different physical conditions. The CID (Chemistry In Disk) consortium is a collaboration between astrochemists and specialist of millimeter observations that aims to study the chemistry of protoplanetary disks. In this talk I will present recent results obtained by the CID project from molecular line observations, and confront them to theoretical models of proto-planetary disks, in particular to the the layered structure that all chemical models predict.